Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 FAM197Y7-201ENST00000432892 766 ntBASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 AL590640.2-201ENST00000457038 527 ntBASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 RPL13AP20-201ENST00000459725 609 ntBASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SHROOM1Q2M3G4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 BRF1-202ENST00000379932 884 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AL355994.2-201ENST00000447882 704 ntBASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 RNA5SP412-201ENST00000516234 123 ntBASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AC093813.1-201ENST00000605066 256 ntBASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 AL138799.1-201ENST00000448213 1675 ntBASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
SHROOM1Q2M3G4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 AC092127.1-201ENST00000567093 3455 ntBASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 AL138709.1-201ENST00000614840 1693 ntBASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 AC078819.1-201ENST00000547454 765 ntBASIC18.23■□□□□ 0.51
SHROOM1Q2M3G4 AC012085.1-201ENST00000548270 765 ntBASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms