Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 AP001282.1-201ENST00000531301 1499 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC11.05□□□□□ -0.64
PRKDCP78527 AC084752.1-201ENST00000509766 622 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 LINC01815-202ENST00000641468 1409 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 MESTP3-201ENST00000503460 968 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 RAP1B-216ENST00000537460 1072 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 AK6-201ENST00000380818 1183 ntTSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 MIR566-201ENST00000385187 94 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 PHKG1P2-201ENST00000457537 863 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 AC008723.1-201ENST00000506922 207 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC11.05□□□□□ -0.64
PRKDCP78527 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 AC018846.1-201ENST00000568231 183 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 ANAPC11-206ENST00000571874 636 ntAPPRIS P1 TSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 LINC01165-201ENST00000445190 1623 ntBASIC11.05□□□□□ -0.64
PRKDCP78527 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC11.05□□□□□ -0.64
PRKDCP78527 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC11.05□□□□□ -0.64
PRKDCP78527 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC11.05□□□□□ -0.64
PRKDCP78527 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC11.04□□□□□ -0.64
PRKDCP78527 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 CTHRC1-202ENST00000415886 571 ntTSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 AC078875.1-201ENST00000431907 724 ntBASIC11.04□□□□□ -0.64
PRKDCP78527 POU5F1P2-201ENST00000521750 823 ntBASIC11.04□□□□□ -0.64
PRKDCP78527 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 RPL14-203ENST00000416518 812 ntTSL 3 BASIC11.04□□□□□ -0.64
PRKDCP78527 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 CTBP2P6-201ENST00000526402 1229 ntBASIC11.04□□□□□ -0.64
PRKDCP78527 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 AC060834.1-201ENST00000443027 2032 ntBASIC11.04□□□□□ -0.64
PRKDCP78527 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC11.04□□□□□ -0.64
PRKDCP78527 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC11.04□□□□□ -0.64
PRKDCP78527 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC11.04□□□□□ -0.64
PRKDCP78527 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC11.04□□□□□ -0.64
PRKDCP78527 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC11.03□□□□□ -0.64
PRKDCP78527 AC026320.2-201ENST00000434379 478 ntBASIC11.03□□□□□ -0.64
PRKDCP78527 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC11.03□□□□□ -0.64
PRKDCP78527 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC11.03□□□□□ -0.64
PRKDCP78527 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC11.03□□□□□ -0.64
PRKDCP78527 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC11.03□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms