Protein–RNA interactions for Protein: P59780

AP3S2, AP-3 complex subunit sigma-2, humanhuman

Predictions only

Length 193 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3S2P59780 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.63□□□□□ -0.23
AP3S2P59780 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC13.63□□□□□ -0.23
AP3S2P59780 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
AP3S2P59780 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 OS9-207ENST00000439210 1946 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.62□□□□□ -0.23
AP3S2P59780 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
AP3S2P59780 AC233702.3-201ENST00000578656 1387 ntBASIC13.62□□□□□ -0.23
AP3S2P59780 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 RELA-227ENST00000615805 2236 ntTSL 5 BASIC13.62□□□□□ -0.23
AP3S2P59780 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC13.62□□□□□ -0.23
AP3S2P59780 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC13.62□□□□□ -0.23
AP3S2P59780 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 CHCHD2P8-201ENST00000429873 447 ntBASIC13.62□□□□□ -0.23
AP3S2P59780 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC13.62□□□□□ -0.23
AP3S2P59780 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.62□□□□□ -0.23
AP3S2P59780 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC13.62□□□□□ -0.23
AP3S2P59780 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.62□□□□□ -0.23
AP3S2P59780 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
AP3S2P59780 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
AP3S2P59780 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
AP3S2P59780 STK33-217ENST00000534493 1895 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC13.61□□□□□ -0.23
AP3S2P59780 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.61□□□□□ -0.23
AP3S2P59780 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.61□□□□□ -0.23
AP3S2P59780 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.61□□□□□ -0.23
AP3S2P59780 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC13.61□□□□□ -0.23
AP3S2P59780 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
AP3S2P59780 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC13.61□□□□□ -0.23
AP3S2P59780 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC13.61□□□□□ -0.23
AP3S2P59780 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC13.61□□□□□ -0.23
AP3S2P59780 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.61□□□□□ -0.23
AP3S2P59780 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
AP3S2P59780 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
AP3S2P59780 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms