Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 AGER-203ENST00000375065 665 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGCS2P54868 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGCS2P54868 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC18.05■□□□□ 0.48
HMGCS2P54868 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
HMGCS2P54868 AC007969.1-201ENST00000433675 447 ntBASIC18.05■□□□□ 0.48
HMGCS2P54868 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
HMGCS2P54868 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC18.05■□□□□ 0.48
HMGCS2P54868 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGCS2P54868 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 AL022328.3-201ENST00000607943 679 ntBASIC18.05■□□□□ 0.48
HMGCS2P54868 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGCS2P54868 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.05■□□□□ 0.48
HMGCS2P54868 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
HMGCS2P54868 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
HMGCS2P54868 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGCS2P54868 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGCS2P54868 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
HMGCS2P54868 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 RNU1-114P-201ENST00000365297 166 ntBASIC18.04■□□□□ 0.48
HMGCS2P54868 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 RNA5SP486-201ENST00000515961 83 ntBASIC18.04■□□□□ 0.48
HMGCS2P54868 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGCS2P54868 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGCS2P54868 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.04■□□□□ 0.48
HMGCS2P54868 KLK3-211ENST00000597483 810 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
HMGCS2P54868 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
HMGCS2P54868 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 AL596087.1-201ENST00000400979 1969 ntBASIC18.04■□□□□ 0.48
HMGCS2P54868 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.04■□□□□ 0.48
HMGCS2P54868 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
HMGCS2P54868 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.04■□□□□ 0.48
HMGCS2P54868 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC18.03■□□□□ 0.48
HMGCS2P54868 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGCS2P54868 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
HMGCS2P54868 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.03■□□□□ 0.48
HMGCS2P54868 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 BTBD6P1-201ENST00000412176 1267 ntBASIC18.03■□□□□ 0.48
HMGCS2P54868 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
HMGCS2P54868 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.03■□□□□ 0.48
HMGCS2P54868 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
HMGCS2P54868 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGCS2P54868 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC18.03■□□□□ 0.48
HMGCS2P54868 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.03■□□□□ 0.48
HMGCS2P54868 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC18.03■□□□□ 0.48
HMGCS2P54868 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.03■□□□□ 0.48
HMGCS2P54868 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HMGCS2P54868 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
HMGCS2P54868 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
HMGCS2P54868 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC18.02■□□□□ 0.48
HMGCS2P54868 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
HMGCS2P54868 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
HMGCS2P54868 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
HMGCS2P54868 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
HMGCS2P54868 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms