Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CLCN3P51790 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.25■□□□□ 0.35
CLCN3P51790 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.25■□□□□ 0.35
CLCN3P51790 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 ENPP7P5-201ENST00000541031 1031 ntBASIC17.25■□□□□ 0.35
CLCN3P51790 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CLCN3P51790 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC17.25■□□□□ 0.35
CLCN3P51790 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC17.25■□□□□ 0.35
CLCN3P51790 MIR4259-201ENST00000584466 101 ntBASIC17.25■□□□□ 0.35
CLCN3P51790 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CLCN3P51790 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 MIR6752-201ENST00000618442 71 ntBASIC17.25■□□□□ 0.35
CLCN3P51790 AC005252.2-201ENST00000624630 1141 ntBASIC17.25■□□□□ 0.35
CLCN3P51790 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CLCN3P51790 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.25■□□□□ 0.35
CLCN3P51790 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.25■□□□□ 0.35
CLCN3P51790 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLCN3P51790 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.24■□□□□ 0.35
CLCN3P51790 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLCN3P51790 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 ANKRD19P-201ENST00000338192 862 ntBASIC17.24■□□□□ 0.35
CLCN3P51790 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.24■□□□□ 0.35
CLCN3P51790 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.24■□□□□ 0.35
CLCN3P51790 AC119751.2-201ENST00000504529 210 ntBASIC17.24■□□□□ 0.35
CLCN3P51790 AC026410.3-201ENST00000514280 936 ntBASIC17.24■□□□□ 0.35
CLCN3P51790 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.24■□□□□ 0.35
CLCN3P51790 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC17.24■□□□□ 0.35
CLCN3P51790 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC17.24■□□□□ 0.35
CLCN3P51790 AC107373.2-201ENST00000607735 490 ntBASIC17.24■□□□□ 0.35
CLCN3P51790 WNT11-204ENST00000621122 789 ntTSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CLCN3P51790 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
CLCN3P51790 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLCN3P51790 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLCN3P51790 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 POLL-217ENST00000628479 1953 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLCN3P51790 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 RPL28-203ENST00000428193 573 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLCN3P51790 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CLCN3P51790 AC068587.3-201ENST00000526613 355 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms