Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
COL1A1P02452 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC18.71■□□□□ 0.59
COL1A1P02452 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC18.71■□□□□ 0.59
COL1A1P02452 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC18.71■□□□□ 0.59
COL1A1P02452 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.71■□□□□ 0.59
COL1A1P02452 PARP8-218ENST00000513738 596 ntTSL 4 BASIC18.71■□□□□ 0.59
COL1A1P02452 AC078819.1-201ENST00000547454 765 ntBASIC18.71■□□□□ 0.59
COL1A1P02452 AC012085.1-201ENST00000548270 765 ntBASIC18.71■□□□□ 0.59
COL1A1P02452 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.71■□□□□ 0.59
COL1A1P02452 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC18.71■□□□□ 0.59
COL1A1P02452 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 AP005019.2-201ENST00000615104 511 ntBASIC18.71■□□□□ 0.59
COL1A1P02452 AC145423.3-201ENST00000615987 467 ntBASIC18.71■□□□□ 0.59
COL1A1P02452 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL1A1P02452 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL1A1P02452 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
COL1A1P02452 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.7■□□□□ 0.58
COL1A1P02452 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC18.7■□□□□ 0.58
COL1A1P02452 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.7■□□□□ 0.58
COL1A1P02452 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.7■□□□□ 0.58
COL1A1P02452 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC18.7■□□□□ 0.58
COL1A1P02452 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.7■□□□□ 0.58
COL1A1P02452 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC18.7■□□□□ 0.58
COL1A1P02452 BX539320.1-201ENST00000623759 877 ntBASIC18.7■□□□□ 0.58
COL1A1P02452 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC18.7■□□□□ 0.58
COL1A1P02452 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC18.7■□□□□ 0.58
COL1A1P02452 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL1A1P02452 AP003680.1-201ENST00000598970 3660 ntBASIC18.7■□□□□ 0.58
COL1A1P02452 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL1A1P02452 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
COL1A1P02452 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 PCDHA1-201ENST00000378133 2726 ntBASIC18.69■□□□□ 0.58
COL1A1P02452 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 DOC2GP-204ENST00000639052 2548 ntBASIC18.69■□□□□ 0.58
COL1A1P02452 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC18.69■□□□□ 0.58
COL1A1P02452 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.69■□□□□ 0.58
COL1A1P02452 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL1A1P02452 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC18.69■□□□□ 0.58
COL1A1P02452 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.69■□□□□ 0.58
COL1A1P02452 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL1A1P02452 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.69■□□□□ 0.58
COL1A1P02452 AC138951.2-201ENST00000623455 1161 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms