Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.9■□□□□ 0.3
FOXN3O00409 AP001160.2-201ENST00000596071 487 ntBASIC16.9■□□□□ 0.3
FOXN3O00409 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
FOXN3O00409 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.9■□□□□ 0.3
FOXN3O00409 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
FOXN3O00409 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
FOXN3O00409 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.89■□□□□ 0.3
FOXN3O00409 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
FOXN3O00409 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.89■□□□□ 0.3
FOXN3O00409 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.89■□□□□ 0.3
FOXN3O00409 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
FOXN3O00409 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 AC074338.1-201ENST00000416825 156 ntBASIC16.89■□□□□ 0.29
FOXN3O00409 AL645939.2-201ENST00000427340 991 ntBASIC16.89■□□□□ 0.29
FOXN3O00409 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.89■□□□□ 0.29
FOXN3O00409 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.89■□□□□ 0.29
FOXN3O00409 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.89■□□□□ 0.29
FOXN3O00409 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 AL033527.5-202ENST00000641632 1098 ntBASIC16.89■□□□□ 0.29
FOXN3O00409 AC079781.4-201ENST00000641908 219 ntBASIC16.89■□□□□ 0.29
FOXN3O00409 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 TUBB3P1-201ENST00000405796 1332 ntBASIC16.89■□□□□ 0.29
FOXN3O00409 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
FOXN3O00409 TNRC18P2-201ENST00000417666 2714 ntBASIC16.89■□□□□ 0.29
FOXN3O00409 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
FOXN3O00409 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.89■□□□□ 0.29
FOXN3O00409 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXN3O00409 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.88■□□□□ 0.29
FOXN3O00409 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.88■□□□□ 0.29
FOXN3O00409 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC16.88■□□□□ 0.29
FOXN3O00409 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.88■□□□□ 0.29
FOXN3O00409 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
FOXN3O00409 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC16.88■□□□□ 0.29
FOXN3O00409 AC004449.1-201ENST00000564240 433 ntBASIC16.88■□□□□ 0.29
FOXN3O00409 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.88■□□□□ 0.29
FOXN3O00409 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC16.88■□□□□ 0.29
FOXN3O00409 MIR6069-201ENST00000620069 79 ntBASIC16.88■□□□□ 0.29
FOXN3O00409 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
FOXN3O00409 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
FOXN3O00409 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 KRT8P44-201ENST00000441609 1350 ntBASIC16.88■□□□□ 0.29
FOXN3O00409 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.88■□□□□ 0.29
FOXN3O00409 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.88■□□□□ 0.29
FOXN3O00409 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
FOXN3O00409 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXN3O00409 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXN3O00409 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
FOXN3O00409 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXN3O00409 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
FOXN3O00409 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.87■□□□□ 0.29
FOXN3O00409 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.87■□□□□ 0.29
FOXN3O00409 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms