Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL691432.1-201ENST00000596308 1422 ntBASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AC023141.5-201ENST00000458585 616 ntBASIC12.83□□□□□ -0.36
FOXA2Q9Y261 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 AC006538.3-201ENST00000612495 578 ntBASIC12.83□□□□□ -0.36
FOXA2Q9Y261 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TKT-202ENST00000423516 2075 ntTSL 2 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
FOXA2Q9Y261 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 MIR346-201ENST00000362234 95 ntBASIC12.82□□□□□ -0.36
FOXA2Q9Y261 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 HLA-H-201ENST00000383620 1096 ntBASIC12.82□□□□□ -0.36
FOXA2Q9Y261 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AC142381.1-201ENST00000426099 345 ntBASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 SLC25A39P2-201ENST00000537614 270 ntBASIC12.82□□□□□ -0.36
FOXA2Q9Y261 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AC084121.4-201ENST00000641598 221 ntBASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AF228730.8-201ENST00000642140 221 ntBASIC12.82□□□□□ -0.36
FOXA2Q9Y261 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
FOXA2Q9Y261 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms