Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 TISP43-201ENST00000409793 538 ntTSL 4 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 AC011742.3-201ENST00000439053 820 ntBASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 AC234782.1-201ENST00000451950 919 ntBASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 PHKG1P2-201ENST00000457537 863 ntBASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 LY6E-208ENST00000520531 490 ntTSL 2 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 AC011491.1-203ENST00000637688 543 ntBASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
ZC3H4Q9UPT8 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 COX6A1P2-201ENST00000620597 330 ntBASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.92■□□□□ 0.62
ZC3H4Q9UPT8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 TPM3P8-201ENST00000330554 643 ntBASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 AL133267.1-201ENST00000398220 340 ntBASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 NCK2-206ENST00000522586 490 ntTSL 5 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 BX539320.1-201ENST00000623759 877 ntBASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
ZC3H4Q9UPT8 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 PCDHB19P-201ENST00000570871 2371 ntBASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
ZC3H4Q9UPT8 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms