Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CUEDC1Q9NWM3 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
CUEDC1Q9NWM3 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 HNRNPA3P1-201ENST00000401429 1139 ntBASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 HNRNPA3P5-201ENST00000455201 833 ntBASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 HNRNPUP1-201ENST00000554987 333 ntBASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 RN7SL371P-201ENST00000578099 267 ntBASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 AL590560.3-201ENST00000623350 461 ntBASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 AL033527.5-202ENST00000641632 1098 ntBASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.33■□□□□ 0.04
CUEDC1Q9NWM3 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 FO393414.2-201ENST00000405153 598 ntBASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.32■□□□□ 0.04
CUEDC1Q9NWM3 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms