Protein–RNA interactions for Protein: Q9HCK8

CHD8, Chromodomain-helicase-DNA-binding protein 8, humanhuman

Predictions only

Length 2,581 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8Q9HCK8 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AP005212.2-201ENST00000584979 510 ntBASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 PP12613-201ENST00000424958 2230 ntBASIC14.34□□□□□ -0.11
CHD8Q9HCK8 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 HIST2H2BA-201ENST00000412169 381 ntBASIC14.34□□□□□ -0.11
CHD8Q9HCK8 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AC026803.1-201ENST00000569130 274 ntBASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 RN7SL163P-201ENST00000583100 276 ntBASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 AC016396.2-201ENST00000562575 1417 ntBASIC14.34□□□□□ -0.11
CHD8Q9HCK8 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
CHD8Q9HCK8 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 AL139094.1-201ENST00000405549 1188 ntBASIC14.33□□□□□ -0.11
CHD8Q9HCK8 AC092638.2-201ENST00000441105 947 ntBASIC14.33□□□□□ -0.11
CHD8Q9HCK8 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
CHD8Q9HCK8 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 SIGLEC20P-201ENST00000595243 1311 ntBASIC14.33□□□□□ -0.12
CHD8Q9HCK8 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 PHBP15-201ENST00000574228 665 ntBASIC14.33□□□□□ -0.12
CHD8Q9HCK8 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 UBALD1-205ENST00000590891 2641 ntBASIC14.33□□□□□ -0.12
CHD8Q9HCK8 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
CHD8Q9HCK8 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms