Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 AC002472.2-201ENST00000442739 958 ntBASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 FAM207CP-201ENST00000443486 507 ntBASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 OARD1-208ENST00000469104 704 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 MIR3197-201ENST00000582241 73 ntBASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 AC009118.2-201ENST00000613275 655 ntBASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 AC004840.1-201ENST00000636359 365 ntBASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
PTCHD1Q96NR3 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AC112504.1-201ENST00000623415 1841 ntBASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 SERBP1P5-201ENST00000510079 1181 ntBASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AC008761.3-201ENST00000624803 892 ntBASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AC004461.2-201ENST00000629517 803 ntBASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 VILL-207ENST00000465644 1857 ntTSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
PTCHD1Q96NR3 HYMAI-201ENST00000635591 3347 ntBASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 MIR661-201ENST00000384842 89 ntBASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 AC114501.2-201ENST00000439631 535 ntBASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PTCHD1Q96NR3 TERF1P3-201ENST00000505638 1227 ntBASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms