Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC126177.1-201ENST00000547829 2218 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC013268.4-201ENST00000637413 2228 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CCDC140Q96MF4 AC022532.1-201ENST00000624563 1728 ntBASIC12.23□□□□□ -0.45
CCDC140Q96MF4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 API5-202ENST00000420461 2009 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AC087499.5-201ENST00000452760 1342 ntBASIC12.22□□□□□ -0.45
CCDC140Q96MF4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 SLED1-202ENST00000512051 380 ntBASIC12.22□□□□□ -0.45
CCDC140Q96MF4 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AL390754.1-201ENST00000619088 582 ntBASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AC104640.1-201ENST00000562617 2109 ntBASIC12.22□□□□□ -0.45
CCDC140Q96MF4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CCDC140Q96MF4 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC12.21□□□□□ -0.45
CCDC140Q96MF4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms