Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 KRT8P44-201ENST00000441609 1350 ntBASIC17.12■□□□□ 0.33
CCDC42Q96M95 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC42Q96M95 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CCDC42Q96M95 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AC126365.1-201ENST00000578585 1514 ntBASIC17.11■□□□□ 0.33
CCDC42Q96M95 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AGAP7P-201ENST00000582299 2062 ntBASIC17.11■□□□□ 0.33
CCDC42Q96M95 AGAP14-201ENST00000624701 2060 ntBASIC17.11■□□□□ 0.33
CCDC42Q96M95 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AL009178.2-201ENST00000597278 2719 ntBASIC17.11■□□□□ 0.33
CCDC42Q96M95 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AC112191.1-201ENST00000523689 701 ntBASIC17.11■□□□□ 0.33
CCDC42Q96M95 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 AC104109.2-201ENST00000602919 1418 ntBASIC17.11■□□□□ 0.33
CCDC42Q96M95 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC42Q96M95 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC42Q96M95 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 LINC01101-201ENST00000622953 1884 ntBASIC17.1■□□□□ 0.33
CCDC42Q96M95 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 OR2I1P-209ENST00000641730 5365 ntBASIC17.1■□□□□ 0.33
CCDC42Q96M95 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 AL450487.1-201ENST00000426799 995 ntBASIC17.1■□□□□ 0.33
CCDC42Q96M95 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 PDPK2P-202ENST00000562415 1191 ntBASIC17.1■□□□□ 0.33
CCDC42Q96M95 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 RARRES2P8-201ENST00000566335 367 ntBASIC17.1■□□□□ 0.33
CCDC42Q96M95 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 FOXO1B-201ENST00000504678 1527 ntBASIC17.1■□□□□ 0.33
CCDC42Q96M95 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC42Q96M95 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC42Q96M95 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC42Q96M95 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CCDC42Q96M95 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms