Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AC016694.1-201ENST00000434179 700 ntBASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 KRT18P43-201ENST00000469825 1281 ntBASIC15.81■□□□□ 0.12
HMGB4Q8WW32 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AP000812.2-201ENST00000538934 718 ntBASIC15.81■□□□□ 0.12
HMGB4Q8WW32 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AC018695.7-201ENST00000624587 2492 ntBASIC15.81■□□□□ 0.12
HMGB4Q8WW32 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
HMGB4Q8WW32 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 YBX1P6-201ENST00000442962 1002 ntBASIC15.8■□□□□ 0.12
HMGB4Q8WW32 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 ATF5-205ENST00000600336 682 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 AC244669.2-201ENST00000612320 853 ntBASIC15.8■□□□□ 0.12
HMGB4Q8WW32 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 AC011676.5-201ENST00000624864 2660 ntBASIC15.8■□□□□ 0.12
HMGB4Q8WW32 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGB4Q8WW32 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 FLJ38576-201ENST00000623820 2459 ntBASIC15.79■□□□□ 0.12
HMGB4Q8WW32 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 ZBTB12BP-201ENST00000314232 1122 ntBASIC15.79■□□□□ 0.12
HMGB4Q8WW32 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGB4Q8WW32 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms