Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 GPR182-203ENST00000622922 591 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 GNE-204ENST00000539208 2190 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL603756.1-201ENST00000606511 2163 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL136982.4-201ENST00000437689 1740 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TOP3BP1-201ENST00000420768 1380 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SLC7A15P-201ENST00000424028 1363 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL512361.1-201ENST00000554200 418 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ADAMTSL4-201ENST00000271643 4250 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL391256.1-201ENST00000443260 1855 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 IRF2BPL-201ENST00000238647 4157 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AC132938.2-201ENST00000579188 680 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 AL591163.1-201ENST00000641757 987 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 NORAD-201ENST00000565493 5339 ntBASIC4.93□□□□□ -1.62
SYNE1Q8NF91 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
SYNE1Q8NF91 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PRYP6-201ENST00000514804 343 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 LY6E-204ENST00000519546 971 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC006277.1-201ENST00000624348 1610 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TDRD9-202ENST00000409874 4782 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AP006294.1-201ENST00000415407 339 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 GPR53P-205ENST00000457298 1084 ntBASIC4.92□□□□□ -1.62
SYNE1Q8NF91 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
SYNE1Q8NF91 KRT8P49-201ENST00000604166 1432 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms