Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 HMGN1P19-201ENST00000436976 333 ntBASIC19.08■□□□□ 0.64
VPS53Q5VIR6 AC009477.1-201ENST00000452936 217 ntBASIC19.08■□□□□ 0.64
VPS53Q5VIR6 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 HNRNPUP1-201ENST00000554987 333 ntBASIC19.08■□□□□ 0.64
VPS53Q5VIR6 MIR4313-201ENST00000580760 101 ntBASIC19.08■□□□□ 0.64
VPS53Q5VIR6 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 AC097359.3-201ENST00000603982 1210 ntBASIC19.08■□□□□ 0.64
VPS53Q5VIR6 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS53Q5VIR6 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 LOX-206ENST00000639739 1626 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 AC087499.5-201ENST00000452760 1342 ntBASIC19.07■□□□□ 0.64
VPS53Q5VIR6 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 PHKG1P2-201ENST00000457537 863 ntBASIC19.07■□□□□ 0.64
VPS53Q5VIR6 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 BANP-201ENST00000286122 2368 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS53Q5VIR6 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 AC074338.1-201ENST00000416825 156 ntBASIC19.06■□□□□ 0.64
VPS53Q5VIR6 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 AC044860.1-202ENST00000559481 777 ntBASIC19.06■□□□□ 0.64
VPS53Q5VIR6 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 AL450472.2-201ENST00000603663 1156 ntBASIC19.06■□□□□ 0.64
VPS53Q5VIR6 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
VPS53Q5VIR6 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms