Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 L34079.1-201ENST00000594374 393 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 AL645939.5-201ENST00000606834 243 ntBASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 AC069224.1-201ENST00000566372 1715 ntBASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 RAC2-202ENST00000401529 569 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 COX5BP1-201ENST00000507622 393 ntBASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 DIO1-215ENST00000610607 796 ntTSL 5 BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CCDC88AQ3V6T2 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 RN7SL713P-201ENST00000582127 302 ntBASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 PPY2P-201ENST00000582808 702 ntBASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 RN7SL555P-201ENST00000584742 339 ntBASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC18.98■□□□□ 0.63
CCDC88AQ3V6T2 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 SMS-201ENST00000379404 1174 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 ACTG1P2-201ENST00000415776 1125 ntBASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 ACTG1P11-201ENST00000425411 1125 ntBASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 RNF41-210ENST00000552244 716 ntTSL 3 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 MIR4750-201ENST00000584564 56 ntBASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 POM121L8P-201ENST00000417732 1281 ntBASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
CCDC88AQ3V6T2 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms