Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.58□□□□□ -0.23
ABCA4P78363 AL121723.1-201ENST00000445194 1519 ntBASIC13.58□□□□□ -0.23
ABCA4P78363 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
ABCA4P78363 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
ABCA4P78363 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
ABCA4P78363 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
ABCA4P78363 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC13.58□□□□□ -0.24
ABCA4P78363 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.58□□□□□ -0.24
ABCA4P78363 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC13.58□□□□□ -0.24
ABCA4P78363 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 ME2P1-201ENST00000426028 1970 ntBASIC13.58□□□□□ -0.24
ABCA4P78363 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.58□□□□□ -0.24
ABCA4P78363 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC13.58□□□□□ -0.24
ABCA4P78363 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC13.58□□□□□ -0.24
ABCA4P78363 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.58□□□□□ -0.24
ABCA4P78363 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC13.58□□□□□ -0.24
ABCA4P78363 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.58□□□□□ -0.24
ABCA4P78363 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC13.58□□□□□ -0.24
ABCA4P78363 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC13.58□□□□□ -0.24
ABCA4P78363 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.58□□□□□ -0.24
ABCA4P78363 NAT9-224ENST00000583757 583 ntTSL 3 BASIC13.58□□□□□ -0.24
ABCA4P78363 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC13.58□□□□□ -0.24
ABCA4P78363 AC005252.2-201ENST00000624630 1141 ntBASIC13.58□□□□□ -0.24
ABCA4P78363 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.58□□□□□ -0.24
ABCA4P78363 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.58□□□□□ -0.24
ABCA4P78363 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.58□□□□□ -0.24
ABCA4P78363 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
ABCA4P78363 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
ABCA4P78363 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
ABCA4P78363 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC13.57□□□□□ -0.24
ABCA4P78363 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 ACTG1P3-201ENST00000431775 1114 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC13.57□□□□□ -0.24
ABCA4P78363 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.57□□□□□ -0.24
ABCA4P78363 PFN1P12-201ENST00000455938 534 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 ENPP7P5-201ENST00000541031 1031 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC13.57□□□□□ -0.24
ABCA4P78363 AC015967.2-201ENST00000624092 234 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 AC006435.4-201ENST00000625037 234 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 AL356737.1-201ENST00000634391 234 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
ABCA4P78363 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC13.57□□□□□ -0.24
ABCA4P78363 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.57□□□□□ -0.24
ABCA4P78363 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 AL139384.1-201ENST00000612143 3047 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC13.57□□□□□ -0.24
ABCA4P78363 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 SOCS2P1-201ENST00000417727 557 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 ELP6-209ENST00000446787 894 ntTSL 3 BASIC13.57□□□□□ -0.24
ABCA4P78363 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC13.57□□□□□ -0.24
ABCA4P78363 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.57□□□□□ -0.24
ABCA4P78363 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 INTS4P2-202ENST00000614726 2019 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
ABCA4P78363 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.57□□□□□ -0.24
ABCA4P78363 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC13.57□□□□□ -0.24
ABCA4P78363 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
ABCA4P78363 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
ABCA4P78363 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.56□□□□□ -0.24
ABCA4P78363 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
ABCA4P78363 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms