Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN1P58418 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN1P58418 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN1P58418 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.17□□□□□ -0.14
CLRN1P58418 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 AC007967.4-201ENST00000614700 386 ntBASIC14.17□□□□□ -0.14
CLRN1P58418 AP001059.3-201ENST00000619053 235 ntBASIC14.17□□□□□ -0.14
CLRN1P58418 RAB34-224ENST00000636513 888 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 AL035456.1-201ENST00000456064 1369 ntBASIC14.17□□□□□ -0.14
CLRN1P58418 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
CLRN1P58418 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 AC092850.2-201ENST00000623821 2697 ntBASIC14.17□□□□□ -0.14
CLRN1P58418 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CLRN1P58418 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC14.17□□□□□ -0.14
CLRN1P58418 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 RBM39-205ENST00000397370 612 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 DNAJB3-202ENST00000449667 1266 ntBASIC14.16□□□□□ -0.14
CLRN1P58418 PHKG1P2-201ENST00000457537 863 ntBASIC14.16□□□□□ -0.14
CLRN1P58418 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.16□□□□□ -0.14
CLRN1P58418 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 LITAF-210ENST00000571976 548 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.16□□□□□ -0.14
CLRN1P58418 LITAF-214ENST00000574703 486 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.16□□□□□ -0.14
CLRN1P58418 MIR4453-201ENST00000584019 89 ntBASIC14.16□□□□□ -0.14
CLRN1P58418 SPIB-207ENST00000597855 564 ntTSL 4 BASIC14.16□□□□□ -0.14
CLRN1P58418 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.16□□□□□ -0.14
CLRN1P58418 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC14.16□□□□□ -0.14
CLRN1P58418 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
CLRN1P58418 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN1P58418 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.15□□□□□ -0.14
CLRN1P58418 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CLRN1P58418 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
CLRN1P58418 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms