Protein–RNA interactions for Protein: P49662

CASP4, Caspase-4, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4P49662 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
CASP4P49662 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CASP4P49662 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.23■□□□□ 0.35
CASP4P49662 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC17.23■□□□□ 0.35
CASP4P49662 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CASP4P49662 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CASP4P49662 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CASP4P49662 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CASP4P49662 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.23■□□□□ 0.35
CASP4P49662 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
CASP4P49662 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CASP4P49662 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.22■□□□□ 0.35
CASP4P49662 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.22■□□□□ 0.35
CASP4P49662 TSSK5P-201ENST00000423978 907 ntBASIC17.22■□□□□ 0.35
CASP4P49662 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.22■□□□□ 0.35
CASP4P49662 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.22■□□□□ 0.35
CASP4P49662 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.22■□□□□ 0.35
CASP4P49662 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.22■□□□□ 0.35
CASP4P49662 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.22■□□□□ 0.35
CASP4P49662 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
CASP4P49662 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC17.22■□□□□ 0.35
CASP4P49662 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CASP4P49662 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CASP4P49662 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 Z97205.2-201ENST00000564697 1639 ntBASIC17.21■□□□□ 0.35
CASP4P49662 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
CASP4P49662 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.21■□□□□ 0.35
CASP4P49662 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC17.21■□□□□ 0.35
CASP4P49662 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.21■□□□□ 0.35
CASP4P49662 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.21■□□□□ 0.35
CASP4P49662 SERBP1P3-201ENST00000459980 809 ntBASIC17.21■□□□□ 0.35
CASP4P49662 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.21■□□□□ 0.35
CASP4P49662 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.21■□□□□ 0.35
CASP4P49662 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.21■□□□□ 0.35
CASP4P49662 AF228730.6-201ENST00000641497 218 ntBASIC17.21■□□□□ 0.35
CASP4P49662 AC084121.3-201ENST00000641716 218 ntBASIC17.21■□□□□ 0.35
CASP4P49662 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.21■□□□□ 0.35
CASP4P49662 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.21■□□□□ 0.35
CASP4P49662 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC17.21■□□□□ 0.35
CASP4P49662 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CASP4P49662 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CASP4P49662 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CASP4P49662 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.21■□□□□ 0.34
CASP4P49662 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CASP4P49662 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.34
CASP4P49662 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CASP4P49662 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CASP4P49662 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
CASP4P49662 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
CASP4P49662 STK33-217ENST00000534493 1895 ntTSL 2 BASIC17.2■□□□□ 0.34
CASP4P49662 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CASP4P49662 C18orf15-201ENST00000623680 2534 ntBASIC17.2■□□□□ 0.34
CASP4P49662 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CASP4P49662 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CASP4P49662 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms