Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC18.21■□□□□ 0.51
SCN4AP35499 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.21■□□□□ 0.51
SCN4AP35499 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.21■□□□□ 0.51
SCN4AP35499 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC18.21■□□□□ 0.51
SCN4AP35499 MIR3677-201ENST00000578964 60 ntBASIC18.21■□□□□ 0.51
SCN4AP35499 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC18.21■□□□□ 0.51
SCN4AP35499 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC18.21■□□□□ 0.51
SCN4AP35499 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
SCN4AP35499 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
SCN4AP35499 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
SCN4AP35499 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
SCN4AP35499 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.2■□□□□ 0.5
SCN4AP35499 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC18.2■□□□□ 0.5
SCN4AP35499 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN4AP35499 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC18.2■□□□□ 0.5
SCN4AP35499 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 KRT8P21-201ENST00000430398 1491 ntBASIC18.2■□□□□ 0.5
SCN4AP35499 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SCN4AP35499 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.2■□□□□ 0.5
SCN4AP35499 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC18.2■□□□□ 0.5
SCN4AP35499 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN4AP35499 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC18.2■□□□□ 0.5
SCN4AP35499 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC18.2■□□□□ 0.5
SCN4AP35499 DUX4L47-201ENST00000566374 394 ntBASIC18.2■□□□□ 0.5
SCN4AP35499 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC18.2■□□□□ 0.5
SCN4AP35499 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC18.2■□□□□ 0.5
SCN4AP35499 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN4AP35499 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
SCN4AP35499 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.2■□□□□ 0.5
SCN4AP35499 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
SCN4AP35499 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.2■□□□□ 0.5
SCN4AP35499 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN4AP35499 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 AP000356.3-201ENST00000382243 753 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN4AP35499 VDAC1P1-201ENST00000439229 848 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC18.19■□□□□ 0.5
SCN4AP35499 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN4AP35499 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN4AP35499 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC18.19■□□□□ 0.5
SCN4AP35499 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 AR-207ENST00000612010 3896 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 AC010141.1-201ENST00000411585 623 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC18.19■□□□□ 0.5
SCN4AP35499 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC18.19■□□□□ 0.5
SCN4AP35499 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SCN4AP35499 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC18.19■□□□□ 0.5
SCN4AP35499 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC18.19■□□□□ 0.5
SCN4AP35499 AC026803.1-201ENST00000569130 274 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 SAMD11P1-201ENST00000571429 661 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.19■□□□□ 0.5
SCN4AP35499 AC004466.1-201ENST00000599515 1080 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 MIR6842-201ENST00000612539 65 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 AL136301.1-201ENST00000615830 422 ntBASIC18.19■□□□□ 0.5
SCN4AP35499 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SCN4AP35499 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC18.18■□□□□ 0.5
SCN4AP35499 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SCN4AP35499 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms