Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.7■□□□□ 0.42
CIITAP33076 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.7■□□□□ 0.42
CIITAP33076 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CIITAP33076 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.7■□□□□ 0.42
CIITAP33076 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.7■□□□□ 0.42
CIITAP33076 AL358472.5-202ENST00000641448 1267 ntBASIC17.7■□□□□ 0.42
CIITAP33076 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CIITAP33076 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CIITAP33076 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.7■□□□□ 0.42
CIITAP33076 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.7■□□□□ 0.42
CIITAP33076 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CIITAP33076 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CIITAP33076 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.69■□□□□ 0.42
CIITAP33076 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 AL139384.1-201ENST00000612143 3047 ntBASIC17.69■□□□□ 0.42
CIITAP33076 AP003680.1-201ENST00000598970 3660 ntBASIC17.69■□□□□ 0.42
CIITAP33076 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CIITAP33076 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC17.69■□□□□ 0.42
CIITAP33076 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.69■□□□□ 0.42
CIITAP33076 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 GALT-202ENST00000450095 1280 ntTSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.69■□□□□ 0.42
CIITAP33076 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.69■□□□□ 0.42
CIITAP33076 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC17.69■□□□□ 0.42
CIITAP33076 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CIITAP33076 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
CIITAP33076 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.69■□□□□ 0.42
CIITAP33076 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 AC009090.5-201ENST00000624886 2285 ntBASIC17.69■□□□□ 0.42
CIITAP33076 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.69■□□□□ 0.42
CIITAP33076 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.69■□□□□ 0.42
CIITAP33076 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.69■□□□□ 0.42
CIITAP33076 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CIITAP33076 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 PRAL-201ENST00000624952 3286 ntBASIC17.68■□□□□ 0.42
CIITAP33076 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.68■□□□□ 0.42
CIITAP33076 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.68■□□□□ 0.42
CIITAP33076 RN7SL692P-201ENST00000464677 288 ntBASIC17.68■□□□□ 0.42
CIITAP33076 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.68■□□□□ 0.42
CIITAP33076 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.68■□□□□ 0.42
CIITAP33076 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC17.68■□□□□ 0.42
CIITAP33076 AC005225.4-201ENST00000557330 545 ntBASIC17.68■□□□□ 0.42
CIITAP33076 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC17.68■□□□□ 0.42
CIITAP33076 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC17.68■□□□□ 0.42
CIITAP33076 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CIITAP33076 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CIITAP33076 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
CIITAP33076 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CIITAP33076 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms