Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CHRNA3P32297 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CHRNA3P32297 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.72■□□□□ 0.27
CHRNA3P32297 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.72■□□□□ 0.27
CHRNA3P32297 FLJ16779-201ENST00000612722 7638 ntBASIC16.72■□□□□ 0.27
CHRNA3P32297 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC16.72■□□□□ 0.27
CHRNA3P32297 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.72■□□□□ 0.27
CHRNA3P32297 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.72■□□□□ 0.27
CHRNA3P32297 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CHRNA3P32297 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
CHRNA3P32297 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.72■□□□□ 0.27
CHRNA3P32297 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.72■□□□□ 0.27
CHRNA3P32297 AC073439.1-201ENST00000624121 1774 ntBASIC16.72■□□□□ 0.27
CHRNA3P32297 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.71■□□□□ 0.27
CHRNA3P32297 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
CHRNA3P32297 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.71■□□□□ 0.27
CHRNA3P32297 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 HMGN1P19-201ENST00000436976 333 ntBASIC16.71■□□□□ 0.27
CHRNA3P32297 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.71■□□□□ 0.27
CHRNA3P32297 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.71■□□□□ 0.27
CHRNA3P32297 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.71■□□□□ 0.27
CHRNA3P32297 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.71■□□□□ 0.27
CHRNA3P32297 AC105233.2-201ENST00000523697 349 ntBASIC16.71■□□□□ 0.27
CHRNA3P32297 AF228730.5-201ENST00000530288 346 ntBASIC16.71■□□□□ 0.27
CHRNA3P32297 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.71■□□□□ 0.27
CHRNA3P32297 AC026150.2-201ENST00000564693 1156 ntBASIC16.71■□□□□ 0.27
CHRNA3P32297 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.71■□□□□ 0.27
CHRNA3P32297 Z92544.3-201ENST00000624747 417 ntBASIC16.71■□□□□ 0.27
CHRNA3P32297 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.71■□□□□ 0.27
CHRNA3P32297 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CHRNA3P32297 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.71■□□□□ 0.27
CHRNA3P32297 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.71■□□□□ 0.27
CHRNA3P32297 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.71■□□□□ 0.27
CHRNA3P32297 AC134407.2-201ENST00000625089 1978 ntBASIC16.71■□□□□ 0.27
CHRNA3P32297 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CHRNA3P32297 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.71■□□□□ 0.27
CHRNA3P32297 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CHRNA3P32297 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CHRNA3P32297 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.71■□□□□ 0.26
CHRNA3P32297 LINC02228-204ENST00000642115 2962 ntBASIC16.71■□□□□ 0.26
CHRNA3P32297 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
CHRNA3P32297 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.7■□□□□ 0.26
CHRNA3P32297 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CHRNA3P32297 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.7■□□□□ 0.26
CHRNA3P32297 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 FAM86GP-201ENST00000448322 971 ntBASIC16.7■□□□□ 0.26
CHRNA3P32297 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CHRNA3P32297 PRYP6-201ENST00000514804 343 ntBASIC16.7■□□□□ 0.26
CHRNA3P32297 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CHRNA3P32297 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.7■□□□□ 0.26
CHRNA3P32297 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms