Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 AC005052.1-201ENST00000625181 2492 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
COL9A1P20849 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.12■□□□□ 0.17
COL9A1P20849 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.12■□□□□ 0.17
COL9A1P20849 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
COL9A1P20849 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
COL9A1P20849 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.12■□□□□ 0.17
COL9A1P20849 AC074338.1-201ENST00000416825 156 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.12■□□□□ 0.17
COL9A1P20849 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 EEF1DP4-201ENST00000446006 880 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 REEP5-205ENST00000504247 480 ntTSL 5 BASIC16.12■□□□□ 0.17
COL9A1P20849 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC16.12■□□□□ 0.17
COL9A1P20849 AC097103.2-206ENST00000514729 588 ntTSL 4 BASIC16.12■□□□□ 0.17
COL9A1P20849 AC078819.1-201ENST00000547454 765 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 AC012085.1-201ENST00000548270 765 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 AP001063.1-201ENST00000568332 529 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 CENPX-208ENST00000584347 799 ntTSL 2 BASIC16.12■□□□□ 0.17
COL9A1P20849 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
COL9A1P20849 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.12■□□□□ 0.17
COL9A1P20849 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.12■□□□□ 0.17
COL9A1P20849 MIR6816-201ENST00000620368 66 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 AC138951.2-201ENST00000623455 1161 ntBASIC16.12■□□□□ 0.17
COL9A1P20849 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
COL9A1P20849 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
COL9A1P20849 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.12■□□□□ 0.17
COL9A1P20849 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.12■□□□□ 0.17
COL9A1P20849 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
COL9A1P20849 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL9A1P20849 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 ACTBP7-201ENST00000418351 1124 ntBASIC16.11■□□□□ 0.17
COL9A1P20849 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 LINC00028-201ENST00000435497 587 ntTSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 PIN4P1-201ENST00000451079 396 ntBASIC16.11■□□□□ 0.17
COL9A1P20849 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 FAM86LP-201ENST00000478302 853 ntBASIC16.11■□□□□ 0.17
COL9A1P20849 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC16.11■□□□□ 0.17
COL9A1P20849 ANAPC15-217ENST00000545944 704 ntAPPRIS P3 TSL 3 BASIC16.11■□□□□ 0.17
COL9A1P20849 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.11■□□□□ 0.17
COL9A1P20849 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.11■□□□□ 0.17
COL9A1P20849 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.11■□□□□ 0.17
COL9A1P20849 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL9A1P20849 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.11■□□□□ 0.17
COL9A1P20849 INTS4P2-202ENST00000614726 2019 ntBASIC16.11■□□□□ 0.17
COL9A1P20849 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL9A1P20849 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.1■□□□□ 0.17
COL9A1P20849 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.1■□□□□ 0.17
COL9A1P20849 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL9A1P20849 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL9A1P20849 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms