Protein–RNA interactions for Protein: P16234

PDGFRA, Platelet-derived growth factor receptor alpha, humanhuman

Predictions only

Length 1,089 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRAP16234 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFRAP16234 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.6■□□□□ 0.25
PDGFRAP16234 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
PDGFRAP16234 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFRAP16234 TSPY26P-202ENST00000565928 3884 ntBASIC16.6■□□□□ 0.25
PDGFRAP16234 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFRAP16234 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.6■□□□□ 0.25
PDGFRAP16234 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.6■□□□□ 0.25
PDGFRAP16234 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PDGFRAP16234 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.59■□□□□ 0.25
PDGFRAP16234 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
PDGFRAP16234 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 INGX-202ENST00000489074 768 ntBASIC16.59■□□□□ 0.25
PDGFRAP16234 RNA5SP421-201ENST00000516864 134 ntBASIC16.59■□□□□ 0.25
PDGFRAP16234 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.59■□□□□ 0.25
PDGFRAP16234 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.59■□□□□ 0.25
PDGFRAP16234 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.59■□□□□ 0.25
PDGFRAP16234 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.59■□□□□ 0.25
PDGFRAP16234 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16.59■□□□□ 0.25
PDGFRAP16234 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
PDGFRAP16234 AL096865.1-201ENST00000606796 927 ntBASIC16.59■□□□□ 0.25
PDGFRAP16234 TEX28P1-201ENST00000613479 1221 ntBASIC16.59■□□□□ 0.25
PDGFRAP16234 TEX28P2-201ENST00000617764 1221 ntBASIC16.59■□□□□ 0.25
PDGFRAP16234 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.59■□□□□ 0.25
PDGFRAP16234 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
PDGFRAP16234 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
PDGFRAP16234 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.59■□□□□ 0.25
PDGFRAP16234 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PDGFRAP16234 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.59■□□□□ 0.25
PDGFRAP16234 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PDGFRAP16234 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.58■□□□□ 0.25
PDGFRAP16234 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
PDGFRAP16234 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.58■□□□□ 0.25
PDGFRAP16234 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
PDGFRAP16234 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
PDGFRAP16234 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
PDGFRAP16234 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.58■□□□□ 0.24
PDGFRAP16234 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.58■□□□□ 0.24
PDGFRAP16234 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.58■□□□□ 0.24
PDGFRAP16234 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 NAA60-208ENST00000570819 833 ntTSL 2 BASIC16.58■□□□□ 0.24
PDGFRAP16234 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.58■□□□□ 0.24
PDGFRAP16234 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.58■□□□□ 0.24
PDGFRAP16234 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
PDGFRAP16234 AC100757.3-201ENST00000622361 1406 ntBASIC16.58■□□□□ 0.24
PDGFRAP16234 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.58■□□□□ 0.24
PDGFRAP16234 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.58■□□□□ 0.24
PDGFRAP16234 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.58■□□□□ 0.24
PDGFRAP16234 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.58■□□□□ 0.24
PDGFRAP16234 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PDGFRAP16234 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 AC136621.1-201ENST00000624017 2304 ntBASIC16.58■□□□□ 0.24
PDGFRAP16234 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
PDGFRAP16234 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PDGFRAP16234 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.58■□□□□ 0.24
PDGFRAP16234 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PDGFRAP16234 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFRAP16234 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.57■□□□□ 0.24
PDGFRAP16234 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.57■□□□□ 0.24
PDGFRAP16234 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
PDGFRAP16234 SSR4P1-203ENST00000599569 2260 ntBASIC16.57■□□□□ 0.24
PDGFRAP16234 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.57■□□□□ 0.24
PDGFRAP16234 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFRAP16234 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PDGFRAP16234 AC090616.6-203ENST00000579186 1945 ntBASIC16.57■□□□□ 0.24
PDGFRAP16234 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms