Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 HYMAI.1-201ENST00000620949 238 ntBASIC11.97□□□□□ -0.49
HLA-DQA1P01909 WDR6-223ENST00000627177 207 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 TNN-203ENST00000622870 3719 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
HLA-DQA1P01909 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 ZBED1P1-201ENST00000502364 1930 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 APP-205ENST00000358918 2366 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 TSPY22P-201ENST00000427496 604 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 RNF126P1-202ENST00000569893 925 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AC091167.2-201ENST00000579581 588 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AL390719.2-201ENST00000606993 987 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 NDUFV2-AS1-203ENST00000608008 779 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AL121956.5-201ENST00000625261 221 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
HLA-DQA1P01909 AC131009.4-201ENST00000624048 1740 ntBASIC11.96□□□□□ -0.49
HLA-DQA1P01909 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 AC027601.5-201ENST00000624065 2482 ntBASIC11.96□□□□□ -0.5
HLA-DQA1P01909 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
HLA-DQA1P01909 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 INTS4P1-203ENST00000641008 3683 ntBASIC11.95□□□□□ -0.5
HLA-DQA1P01909 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
HLA-DQA1P01909 CICP20-201ENST00000443330 2801 ntBASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 114.4 ms