Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LMX1BO60663 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.96□□□□□ -0.17
LMX1BO60663 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
LMX1BO60663 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LMX1BO60663 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 AL109954.1-202ENST00000564051 2148 ntBASIC13.96□□□□□ -0.17
LMX1BO60663 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 COPE-202ENST00000349893 948 ntTSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 BAD-202ENST00000394531 631 ntTSL 3 BASIC13.96□□□□□ -0.17
LMX1BO60663 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.96□□□□□ -0.17
LMX1BO60663 FAM58DP-201ENST00000428076 619 ntBASIC13.96□□□□□ -0.17
LMX1BO60663 AC245100.5-201ENST00000452108 331 ntBASIC13.96□□□□□ -0.17
LMX1BO60663 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC13.96□□□□□ -0.17
LMX1BO60663 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LMX1BO60663 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 IGHV3-42-201ENST00000520410 361 ntBASIC13.96□□□□□ -0.17
LMX1BO60663 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.96□□□□□ -0.17
LMX1BO60663 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 BAD-207ENST00000544785 525 ntTSL 3 BASIC13.96□□□□□ -0.17
LMX1BO60663 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
LMX1BO60663 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.96□□□□□ -0.17
LMX1BO60663 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
LMX1BO60663 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.18
LMX1BO60663 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC13.96□□□□□ -0.18
LMX1BO60663 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 AC090616.6-203ENST00000579186 1945 ntBASIC13.96□□□□□ -0.18
LMX1BO60663 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
LMX1BO60663 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 TMBIM7P-203ENST00000641617 1718 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC13.95□□□□□ -0.18
LMX1BO60663 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
LMX1BO60663 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC13.95□□□□□ -0.18
LMX1BO60663 AC105250.1-201ENST00000509378 2057 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 AC087481.3-201ENST00000602886 1894 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.95□□□□□ -0.18
LMX1BO60663 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.95□□□□□ -0.18
LMX1BO60663 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LMX1BO60663 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 SPDYE7P-202ENST00000420373 878 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.95□□□□□ -0.18
LMX1BO60663 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC13.95□□□□□ -0.18
LMX1BO60663 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC13.95□□□□□ -0.18
LMX1BO60663 AC002472.2-201ENST00000442739 958 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 AL512638.1-201ENST00000457493 794 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC13.95□□□□□ -0.18
LMX1BO60663 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.95□□□□□ -0.18
LMX1BO60663 AC140878.1-201ENST00000565277 250 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.95□□□□□ -0.18
LMX1BO60663 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC13.95□□□□□ -0.18
LMX1BO60663 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms