Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 RERG-209ENST00000546331 1383 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SHROOM4Q9ULL8 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 AC005077.2-201ENST00000449786 690 ntBASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 VDAC1P7-201ENST00000462417 847 ntBASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 AMT-233ENST00000636522 1620 ntTSL 2 BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHROOM4Q9ULL8 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 SP100-205ENST00000409824 1802 ntTSL 5 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 PTPA-217ENST00000434095 870 ntTSL 2 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 AC093433.1-201ENST00000458048 571 ntBASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 U62317.3-201ENST00000608319 855 ntBASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
SHROOM4Q9ULL8 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 RPSAP36-202ENST00000494591 1261 ntBASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 MBP-227ENST00000526111 581 ntTSL 4 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 TP73-209ENST00000603362 1668 ntTSL 5 BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
SHROOM4Q9ULL8 USE1-206ENST00000595101 1776 ntTSL 2 BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
SHROOM4Q9ULL8 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC29.7■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms