Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 ZBED1P1-201ENST00000502364 1930 ntBASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
LIMA1Q9UHB6 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 MCCD1P2-201ENST00000423228 335 ntBASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 AC069335.1-201ENST00000489972 472 ntBASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 SUOX-214ENST00000551841 906 ntTSL 3 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 RARRES2P9-201ENST00000565168 469 ntBASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 AC120114.3-201ENST00000611923 658 ntBASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 AL390755.1-201ENST00000623716 2027 ntBASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 MROH4P-201ENST00000431302 1578 ntBASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LIMA1Q9UHB6 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 NME4-207ENST00000450036 985 ntTSL 3 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 FXR1-221ENST00000491674 365 ntTSL 2 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 NMU-202ENST00000505262 693 ntTSL 3 BASIC17.27■□□□□ 0.36
LIMA1Q9UHB6 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms