Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
CCDC39Q9UFE4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 MIR574-201ENST00000385209 96 ntBASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 PRYP6-201ENST00000514804 343 ntBASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 AC099522.2-201ENST00000607001 744 ntBASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 PMS2P7-201ENST00000506558 1336 ntBASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCDC39Q9UFE4 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCDC39Q9UFE4 OR2I1P-210ENST00000642037 4691 ntBASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 AC002347.1-201ENST00000569543 541 ntBASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 AL365330.1-201ENST00000607459 531 ntBASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCDC39Q9UFE4 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 AC087481.3-201ENST00000602886 1894 ntBASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCDC39Q9UFE4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms