Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DPM3-202ENST00000368399 517 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.54□□□□□ -0.24
COL12A1Q99715 MARK2P5-201ENST00000507649 634 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 ALG1L6P-201ENST00000515248 758 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.54□□□□□ -0.24
COL12A1Q99715 MEG3_2.1-201ENST00000611456 105 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 AC233280.19-201ENST00000633223 136 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC13.54□□□□□ -0.24
COL12A1Q99715 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 PGR-209ENST00000617858 2816 ntTSL 5 BASIC13.54□□□□□ -0.24
COL12A1Q99715 TBC1D3J-201ENST00000620719 1426 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC13.54□□□□□ -0.24
COL12A1Q99715 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
COL12A1Q99715 AL390961.4-201ENST00000623958 2535 ntBASIC13.54□□□□□ -0.24
COL12A1Q99715 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
COL12A1Q99715 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
COL12A1Q99715 HPGD-203ENST00000422112 805 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC13.53□□□□□ -0.24
COL12A1Q99715 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC13.53□□□□□ -0.24
COL12A1Q99715 AP003171.2-201ENST00000528208 925 ntBASIC13.53□□□□□ -0.24
COL12A1Q99715 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC13.53□□□□□ -0.24
COL12A1Q99715 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.53□□□□□ -0.24
COL12A1Q99715 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
COL12A1Q99715 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC13.53□□□□□ -0.24
COL12A1Q99715 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 NDUFS6P1-201ENST00000485187 316 ntBASIC13.53□□□□□ -0.24
COL12A1Q99715 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.53□□□□□ -0.24
COL12A1Q99715 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC13.53□□□□□ -0.24
COL12A1Q99715 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC13.53□□□□□ -0.24
COL12A1Q99715 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 UROS-201ENST00000368774 744 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
COL12A1Q99715 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC13.53□□□□□ -0.24
COL12A1Q99715 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC13.53□□□□□ -0.24
COL12A1Q99715 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.53□□□□□ -0.24
COL12A1Q99715 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.53□□□□□ -0.24
COL12A1Q99715 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL12A1Q99715 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC13.52□□□□□ -0.24
COL12A1Q99715 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC13.52□□□□□ -0.24
COL12A1Q99715 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL12A1Q99715 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL12A1Q99715 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
COL12A1Q99715 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL12A1Q99715 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL12A1Q99715 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.24
COL12A1Q99715 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.52□□□□□ -0.24
COL12A1Q99715 AC244250.3-201ENST00000620749 366 ntBASIC13.52□□□□□ -0.24
COL12A1Q99715 AC068587.8-201ENST00000641239 219 ntBASIC13.52□□□□□ -0.24
COL12A1Q99715 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
COL12A1Q99715 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
COL12A1Q99715 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 INE2-201ENST00000630399 1874 ntBASIC13.52□□□□□ -0.25
COL12A1Q99715 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
COL12A1Q99715 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.52□□□□□ -0.25
COL12A1Q99715 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
COL12A1Q99715 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
COL12A1Q99715 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
COL12A1Q99715 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL12A1Q99715 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
COL12A1Q99715 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC13.52□□□□□ -0.25
COL12A1Q99715 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
COL12A1Q99715 AC020922.3-201ENST00000595064 547 ntBASIC13.52□□□□□ -0.25
COL12A1Q99715 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC13.52□□□□□ -0.25
COL12A1Q99715 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC13.52□□□□□ -0.25
COL12A1Q99715 MIR6816-201ENST00000620368 66 ntBASIC13.52□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms