Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 OARD1-208ENST00000469104 704 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 STOM-203ENST00000538954 1257 ntTSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CHMP4CQ96CF2 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 KLK8-202ENST00000320838 456 ntTSL 5 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 VMA21-202ENST00000370361 693 ntTSL 5 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CCDC74BP1-201ENST00000508880 1123 ntBASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CHMP4CQ96CF2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 MDH2-205ENST00000461263 648 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 AC008738.7-201ENST00000609744 511 ntBASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 IMPDH1P4-201ENST00000445028 1534 ntBASIC18.9■□□□□ 0.62
CHMP4CQ96CF2 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHMP4CQ96CF2 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
CHMP4CQ96CF2 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms