Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 AC026396.1-201ENST00000419388 421 ntBASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 SPDYE11-202ENST00000450699 704 ntBASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 SPDYE9P-201ENST00000570642 692 ntBASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 SPDYE10P-202ENST00000612005 668 ntBASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 SPDYE8P-202ENST00000612377 668 ntBASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.26■□□□□ 0.03
CLHC1Q8NHS4 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AC091951.1-201ENST00000512854 2465 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 SPCS2P4-201ENST00000436160 681 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 TIMM8BP1-201ENST00000452384 211 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 RN7SL589P-201ENST00000481268 310 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 POLD2P1-201ENST00000511220 997 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AP000842.3-202ENST00000569238 1080 ntBASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
CLHC1Q8NHS4 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms