Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 FO538757.1-201ENST00000623083 1397 ntBASIC18.68■□□□□ 0.58
SYNE3Q6ZMZ3 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 AC027369.6-201ENST00000525520 931 ntBASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 RPL28-205ENST00000558131 444 ntTSL 5 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SYNE3Q6ZMZ3 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 AC018892.3-201ENST00000623986 2499 ntBASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 MIR943-201ENST00000401286 94 ntBASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 RPL37AP1-201ENST00000412502 279 ntBASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 SPDYE12P-201ENST00000618416 771 ntBASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SYNE3Q6ZMZ3 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 MBP-202ENST00000355994 2772 ntTSL 5 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AZGP1P1-201ENST00000411909 902 ntBASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 PMS2P2-201ENST00000425039 1128 ntBASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 IGHV3-42-201ENST00000520410 361 ntBASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AL158211.3-201ENST00000607385 239 ntBASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AC106028.4-201ENST00000614509 607 ntBASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AL138828.2-201ENST00000615812 383 ntBASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SYNE3Q6ZMZ3 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms