Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 AP003680.1-201ENST00000598970 3660 ntBASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 AC087163.2-201ENST00000457299 853 ntBASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
PPP4R4Q6NUP7 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
PPP4R4Q6NUP7 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 RPP21-221ENST00000428040 594 ntTSL 2 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 PRSS29P-201ENST00000440800 595 ntBASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.26■□□□□ 0.03
PPP4R4Q6NUP7 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 BCAR1-209ENST00000546196 1340 ntBASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 CICP4-201ENST00000447359 2812 ntBASIC15.25■□□□□ 0.03
PPP4R4Q6NUP7 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms