Protein–RNA interactions for Protein: Q08945

SSRP1, FACT complex subunit SSRP1, humanhuman

Known RBP Predictions only

Length 709 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1Q08945 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.35■□□□□ 0.53
SSRP1Q08945 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.35■□□□□ 0.53
SSRP1Q08945 AC092183.1-201ENST00000469884 875 ntBASIC18.35■□□□□ 0.53
SSRP1Q08945 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC18.35■□□□□ 0.53
SSRP1Q08945 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.35■□□□□ 0.53
SSRP1Q08945 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.35■□□□□ 0.53
SSRP1Q08945 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC18.35■□□□□ 0.53
SSRP1Q08945 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC18.35■□□□□ 0.53
SSRP1Q08945 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.35■□□□□ 0.53
SSRP1Q08945 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 HYMAI-201ENST00000635591 3347 ntBASIC18.35■□□□□ 0.53
SSRP1Q08945 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC18.35■□□□□ 0.53
SSRP1Q08945 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SSRP1Q08945 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
SSRP1Q08945 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.35■□□□□ 0.53
SSRP1Q08945 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SSRP1Q08945 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.34■□□□□ 0.53
SSRP1Q08945 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SSRP1Q08945 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC18.34■□□□□ 0.53
SSRP1Q08945 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC18.34■□□□□ 0.53
SSRP1Q08945 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC18.34■□□□□ 0.53
SSRP1Q08945 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC18.34■□□□□ 0.53
SSRP1Q08945 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 RN7SL618P-201ENST00000477850 296 ntBASIC18.34■□□□□ 0.53
SSRP1Q08945 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.34■□□□□ 0.53
SSRP1Q08945 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 MPI-209ENST00000564003 1195 ntTSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.34■□□□□ 0.53
SSRP1Q08945 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.34■□□□□ 0.53
SSRP1Q08945 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SSRP1Q08945 AC009090.5-201ENST00000624886 2285 ntBASIC18.34■□□□□ 0.53
SSRP1Q08945 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SSRP1Q08945 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC18.33■□□□□ 0.53
SSRP1Q08945 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSRP1Q08945 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.33■□□□□ 0.53
SSRP1Q08945 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSRP1Q08945 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
SSRP1Q08945 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSRP1Q08945 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SSRP1Q08945 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
SSRP1Q08945 AC068587.6-202ENST00000641839 5619 ntBASIC18.33■□□□□ 0.52
SSRP1Q08945 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.33■□□□□ 0.52
SSRP1Q08945 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SSRP1Q08945 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.33■□□□□ 0.52
SSRP1Q08945 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.33■□□□□ 0.52
SSRP1Q08945 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.33■□□□□ 0.52
SSRP1Q08945 IGHV3-42-201ENST00000520410 361 ntBASIC18.33■□□□□ 0.52
SSRP1Q08945 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC18.33■□□□□ 0.52
SSRP1Q08945 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms