Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
RNF4P78317 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 PIN1P1-201ENST00000412108 996 ntBASIC14.66□□□□□ -0.06
RNF4P78317 RPL13P2-201ENST00000440687 659 ntBASIC14.66□□□□□ -0.06
RNF4P78317 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.66□□□□□ -0.06
RNF4P78317 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.66□□□□□ -0.06
RNF4P78317 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
RNF4P78317 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC14.66□□□□□ -0.06
RNF4P78317 MIR4313-201ENST00000580760 101 ntBASIC14.66□□□□□ -0.06
RNF4P78317 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 LINC02084-201ENST00000606069 1096 ntBASIC14.66□□□□□ -0.06
RNF4P78317 AC004790.1-201ENST00000612686 536 ntBASIC14.66□□□□□ -0.06
RNF4P78317 AF228730.6-201ENST00000641497 218 ntBASIC14.66□□□□□ -0.06
RNF4P78317 AC084121.3-201ENST00000641716 218 ntBASIC14.66□□□□□ -0.06
RNF4P78317 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC14.66□□□□□ -0.06
RNF4P78317 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.66□□□□□ -0.06
RNF4P78317 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.66□□□□□ -0.06
RNF4P78317 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.66□□□□□ -0.06
RNF4P78317 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.66□□□□□ -0.06
RNF4P78317 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.66□□□□□ -0.06
RNF4P78317 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
RNF4P78317 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
RNF4P78317 AP003680.1-201ENST00000598970 3660 ntBASIC14.65□□□□□ -0.06
RNF4P78317 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
RNF4P78317 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RNF4P78317 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
RNF4P78317 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.65□□□□□ -0.06
RNF4P78317 AL589987.1-201ENST00000453380 819 ntBASIC14.65□□□□□ -0.06
RNF4P78317 MEIS3P1-201ENST00000495167 958 ntBASIC14.65□□□□□ -0.06
RNF4P78317 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.65□□□□□ -0.06
RNF4P78317 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.65□□□□□ -0.06
RNF4P78317 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.65□□□□□ -0.06
RNF4P78317 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
RNF4P78317 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
RNF4P78317 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.65□□□□□ -0.06
RNF4P78317 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
RNF4P78317 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 AC007541.1-201ENST00000570282 1469 ntBASIC14.64□□□□□ -0.07
RNF4P78317 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.64□□□□□ -0.07
RNF4P78317 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.64□□□□□ -0.07
RNF4P78317 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.64□□□□□ -0.07
RNF4P78317 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
RNF4P78317 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms