Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC17.82■□□□□ 0.44
TPM4P67936 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.82■□□□□ 0.44
TPM4P67936 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.82■□□□□ 0.44
TPM4P67936 RNPS1P1-201ENST00000507437 918 ntBASIC17.82■□□□□ 0.44
TPM4P67936 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.82■□□□□ 0.44
TPM4P67936 AC002347.1-201ENST00000569543 541 ntBASIC17.82■□□□□ 0.44
TPM4P67936 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.82■□□□□ 0.44
TPM4P67936 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TPM4P67936 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TPM4P67936 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
TPM4P67936 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.81■□□□□ 0.44
TPM4P67936 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC17.81■□□□□ 0.44
TPM4P67936 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.81■□□□□ 0.44
TPM4P67936 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC17.81■□□□□ 0.44
TPM4P67936 AL009183.1-201ENST00000603760 355 ntBASIC17.81■□□□□ 0.44
TPM4P67936 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.81■□□□□ 0.44
TPM4P67936 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
TPM4P67936 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.81■□□□□ 0.44
TPM4P67936 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
TPM4P67936 AC073439.1-201ENST00000624121 1774 ntBASIC17.81■□□□□ 0.44
TPM4P67936 AP002414.3-201ENST00000589352 1468 ntBASIC17.81■□□□□ 0.44
TPM4P67936 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TPM4P67936 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 CTBP1-AS2-206ENST00000581398 5652 ntBASIC17.8■□□□□ 0.44
TPM4P67936 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TPM4P67936 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 RNF146-204ENST00000476956 884 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 AC126365.1-201ENST00000578585 1514 ntBASIC17.8■□□□□ 0.44
TPM4P67936 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
TPM4P67936 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
TPM4P67936 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC17.8■□□□□ 0.44
TPM4P67936 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
TPM4P67936 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM4P67936 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM4P67936 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM4P67936 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
TPM4P67936 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
TPM4P67936 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC17.79■□□□□ 0.44
TPM4P67936 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms