Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
FOXA3P55318 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
FOXA3P55318 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC11.96□□□□□ -0.49
FOXA3P55318 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 AC233702.3-201ENST00000578656 1387 ntBASIC11.96□□□□□ -0.49
FOXA3P55318 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
FOXA3P55318 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 AC005521.1-201ENST00000393351 872 ntBASIC11.96□□□□□ -0.49
FOXA3P55318 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC11.96□□□□□ -0.49
FOXA3P55318 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 MINOS1P3-201ENST00000457048 203 ntBASIC11.96□□□□□ -0.49
FOXA3P55318 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC11.96□□□□□ -0.49
FOXA3P55318 EHF-205ENST00000527935 557 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 Z69720.1-201ENST00000601483 472 ntBASIC11.96□□□□□ -0.49
FOXA3P55318 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 WT1-AS_2.1-201ENST00000613208 137 ntBASIC11.96□□□□□ -0.49
FOXA3P55318 AL589182.2-201ENST00000619332 1049 ntBASIC11.96□□□□□ -0.49
FOXA3P55318 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC11.96□□□□□ -0.49
FOXA3P55318 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC11.96□□□□□ -0.49
FOXA3P55318 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
FOXA3P55318 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC11.96□□□□□ -0.5
FOXA3P55318 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC11.96□□□□□ -0.5
FOXA3P55318 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.5
FOXA3P55318 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC11.96□□□□□ -0.5
FOXA3P55318 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC11.96□□□□□ -0.5
FOXA3P55318 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC11.96□□□□□ -0.5
FOXA3P55318 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
FOXA3P55318 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC11.96□□□□□ -0.5
FOXA3P55318 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
FOXA3P55318 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.5
FOXA3P55318 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 WASH6P-202ENST00000359512 1437 ntBASIC11.95□□□□□ -0.5
FOXA3P55318 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.95□□□□□ -0.5
FOXA3P55318 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC11.95□□□□□ -0.5
FOXA3P55318 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC11.95□□□□□ -0.5
FOXA3P55318 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
FOXA3P55318 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms