Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 KRT8P35-201ENST00000483942 1338 ntBASIC16.6■□□□□ 0.25
COL4A4P53420 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.6■□□□□ 0.25
COL4A4P53420 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL4A4P53420 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.6■□□□□ 0.25
COL4A4P53420 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL4A4P53420 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A4P53420 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL4A4P53420 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 AL133267.1-201ENST00000398220 340 ntBASIC16.59■□□□□ 0.25
COL4A4P53420 POM121L10P-201ENST00000436994 1285 ntBASIC16.59■□□□□ 0.25
COL4A4P53420 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A4P53420 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.59■□□□□ 0.25
COL4A4P53420 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.59■□□□□ 0.25
COL4A4P53420 RN7SL11P-201ENST00000471305 293 ntBASIC16.59■□□□□ 0.25
COL4A4P53420 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.59■□□□□ 0.25
COL4A4P53420 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 AP003171.2-201ENST00000528208 925 ntBASIC16.59■□□□□ 0.25
COL4A4P53420 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.59■□□□□ 0.25
COL4A4P53420 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.59■□□□□ 0.25
COL4A4P53420 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A4P53420 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL4A4P53420 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A4P53420 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL4A4P53420 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL4A4P53420 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A4P53420 MPV17-204ENST00000399052 749 ntTSL 4 BASIC16.59■□□□□ 0.25
COL4A4P53420 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.59■□□□□ 0.25
COL4A4P53420 CYP46A4P-201ENST00000414953 267 ntBASIC16.59■□□□□ 0.25
COL4A4P53420 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A4P53420 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 RN7SL769P-201ENST00000469386 295 ntBASIC16.59■□□□□ 0.25
COL4A4P53420 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.59■□□□□ 0.25
COL4A4P53420 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A4P53420 AP000346.4-201ENST00000614827 381 ntBASIC16.59■□□□□ 0.25
COL4A4P53420 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.59■□□□□ 0.25
COL4A4P53420 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL4A4P53420 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A4P53420 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
COL4A4P53420 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A4P53420 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL4A4P53420 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.58■□□□□ 0.25
COL4A4P53420 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A4P53420 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A4P53420 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC16.58■□□□□ 0.24
COL4A4P53420 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.58■□□□□ 0.24
COL4A4P53420 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
COL4A4P53420 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A4P53420 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A4P53420 EEF1DP6-201ENST00000449232 372 ntBASIC16.58■□□□□ 0.24
COL4A4P53420 PHKG1P2-201ENST00000457537 863 ntBASIC16.58■□□□□ 0.24
COL4A4P53420 RN7SL720P-201ENST00000488178 304 ntBASIC16.58■□□□□ 0.24
COL4A4P53420 AC022217.1-201ENST00000521069 738 ntBASIC16.58■□□□□ 0.24
COL4A4P53420 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC16.58■□□□□ 0.24
COL4A4P53420 AC013355.1-201ENST00000562625 723 ntBASIC16.58■□□□□ 0.24
COL4A4P53420 AC079336.7-201ENST00000623428 1078 ntBASIC16.58■□□□□ 0.24
COL4A4P53420 AC015818.8-201ENST00000587907 1519 ntBASIC16.58■□□□□ 0.24
COL4A4P53420 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A4P53420 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.58■□□□□ 0.24
COL4A4P53420 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL4A4P53420 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.57■□□□□ 0.24
COL4A4P53420 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 PTPA-218ENST00000435132 618 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.57■□□□□ 0.24
COL4A4P53420 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC16.57■□□□□ 0.24
COL4A4P53420 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC16.57■□□□□ 0.24
COL4A4P53420 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL4A4P53420 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.57■□□□□ 0.24
COL4A4P53420 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms