Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
NUP98P52948 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC19.31■□□□□ 0.68
NUP98P52948 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NUP98P52948 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
NUP98P52948 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
NUP98P52948 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.31■□□□□ 0.68
NUP98P52948 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
NUP98P52948 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
NUP98P52948 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC19.3■□□□□ 0.68
NUP98P52948 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC19.3■□□□□ 0.68
NUP98P52948 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC19.3■□□□□ 0.68
NUP98P52948 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
NUP98P52948 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
NUP98P52948 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC19.3■□□□□ 0.68
NUP98P52948 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC19.3■□□□□ 0.68
NUP98P52948 SDHD-202ENST00000525291 790 ntTSL 3 BASIC19.3■□□□□ 0.68
NUP98P52948 AC023310.1-201ENST00000554836 735 ntBASIC19.3■□□□□ 0.68
NUP98P52948 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.3■□□□□ 0.68
NUP98P52948 SUPT20HL2-201ENST00000486479 2409 ntBASIC19.3■□□□□ 0.68
NUP98P52948 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC19.3■□□□□ 0.68
NUP98P52948 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
NUP98P52948 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC19.3■□□□□ 0.68
NUP98P52948 PRORSD1P-202ENST00000563365 2154 ntBASIC19.3■□□□□ 0.68
NUP98P52948 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
NUP98P52948 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
NUP98P52948 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC19.3■□□□□ 0.68
NUP98P52948 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.3■□□□□ 0.68
NUP98P52948 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.3■□□□□ 0.68
NUP98P52948 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC19.3■□□□□ 0.68
NUP98P52948 RN7SL48P-201ENST00000579283 293 ntBASIC19.3■□□□□ 0.68
NUP98P52948 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
NUP98P52948 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC19.29■□□□□ 0.68
NUP98P52948 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 AC004898.1-201ENST00000451057 766 ntBASIC19.29■□□□□ 0.68
NUP98P52948 SCARNA20.5-201ENST00000516991 142 ntBASIC19.29■□□□□ 0.68
NUP98P52948 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC19.29■□□□□ 0.68
NUP98P52948 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC19.29■□□□□ 0.68
NUP98P52948 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 AC004466.1-201ENST00000599515 1080 ntBASIC19.29■□□□□ 0.68
NUP98P52948 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC19.29■□□□□ 0.68
NUP98P52948 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC19.29■□□□□ 0.68
NUP98P52948 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC19.29■□□□□ 0.68
NUP98P52948 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
NUP98P52948 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP98P52948 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.28■□□□□ 0.68
NUP98P52948 RHOQP1-201ENST00000555758 579 ntBASIC19.28■□□□□ 0.68
NUP98P52948 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC19.28■□□□□ 0.68
NUP98P52948 ZACNP1-201ENST00000612259 710 ntBASIC19.28■□□□□ 0.68
NUP98P52948 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
NUP98P52948 PPA1-206ENST00000625364 644 ntTSL 5 BASIC19.28■□□□□ 0.68
NUP98P52948 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC19.28■□□□□ 0.68
NUP98P52948 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.28■□□□□ 0.68
NUP98P52948 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
NUP98P52948 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP98P52948 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC19.28■□□□□ 0.68
NUP98P52948 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC19.28■□□□□ 0.68
NUP98P52948 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
NUP98P52948 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms