Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 AL109954.1-202ENST00000564051 2148 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 FOXO1B-201ENST00000504678 1527 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 ALG1L5P-201ENST00000482043 771 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 C20orf181-201ENST00000623918 480 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 AC006486.2-201ENST00000624246 2199 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 AP001282.1-201ENST00000531301 1499 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 AC090616.6-203ENST00000579186 1945 ntBASIC12.13□□□□□ -0.47
HLA-DMBP28068 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC12.13□□□□□ -0.47
HLA-DMBP28068 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HLA-DMBP28068 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 AC105250.1-201ENST00000509378 2057 ntBASIC12.12□□□□□ -0.47
HLA-DMBP28068 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 CD82-202ENST00000342935 967 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 AC002056.1-201ENST00000395613 760 ntBASIC12.12□□□□□ -0.47
HLA-DMBP28068 HTR5BP-201ENST00000430851 1154 ntBASIC12.12□□□□□ -0.47
HLA-DMBP28068 AC092183.1-201ENST00000469884 875 ntBASIC12.12□□□□□ -0.47
HLA-DMBP28068 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC12.12□□□□□ -0.47
HLA-DMBP28068 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HLA-DMBP28068 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms