Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 AC126177.1-201ENST00000547829 2218 ntBASIC18.41■□□□□ 0.54
CDKL5O76039 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.4■□□□□ 0.54
CDKL5O76039 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.4■□□□□ 0.54
CDKL5O76039 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 AC104640.1-201ENST00000562617 2109 ntBASIC18.4■□□□□ 0.54
CDKL5O76039 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
CDKL5O76039 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CDKL5O76039 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.4■□□□□ 0.54
CDKL5O76039 AL645939.2-201ENST00000427340 991 ntBASIC18.4■□□□□ 0.54
CDKL5O76039 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 NME4-207ENST00000450036 985 ntTSL 3 BASIC18.4■□□□□ 0.54
CDKL5O76039 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC18.4■□□□□ 0.54
CDKL5O76039 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.4■□□□□ 0.54
CDKL5O76039 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
CDKL5O76039 AC139530.3-201ENST00000620344 690 ntBASIC18.4■□□□□ 0.54
CDKL5O76039 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC18.4■□□□□ 0.54
CDKL5O76039 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 GRN-214ENST00000589265 1632 ntTSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
CDKL5O76039 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.4■□□□□ 0.54
CDKL5O76039 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CDKL5O76039 MST1L-201ENST00000442552 2185 ntBASIC18.4■□□□□ 0.54
CDKL5O76039 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDKL5O76039 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDKL5O76039 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.39■□□□□ 0.54
CDKL5O76039 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDKL5O76039 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDKL5O76039 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC18.39■□□□□ 0.54
CDKL5O76039 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.54
CDKL5O76039 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC18.39■□□□□ 0.54
CDKL5O76039 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CDKL5O76039 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.39■□□□□ 0.54
CDKL5O76039 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CDKL5O76039 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC18.39■□□□□ 0.53
CDKL5O76039 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
CDKL5O76039 BAD-202ENST00000394531 631 ntTSL 3 BASIC18.39■□□□□ 0.53
CDKL5O76039 RPL37AP1-201ENST00000412502 279 ntBASIC18.39■□□□□ 0.53
CDKL5O76039 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.39■□□□□ 0.53
CDKL5O76039 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.39■□□□□ 0.53
CDKL5O76039 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 BAD-207ENST00000544785 525 ntTSL 3 BASIC18.39■□□□□ 0.53
CDKL5O76039 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.39■□□□□ 0.53
CDKL5O76039 SPDYE12P-201ENST00000618416 771 ntBASIC18.39■□□□□ 0.53
CDKL5O76039 AL033527.5-202ENST00000641632 1098 ntBASIC18.39■□□□□ 0.53
CDKL5O76039 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC18.39■□□□□ 0.53
CDKL5O76039 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.39■□□□□ 0.53
CDKL5O76039 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CDKL5O76039 FES-204ENST00000414248 2327 ntTSL 2 BASIC18.39■□□□□ 0.53
CDKL5O76039 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC18.39■□□□□ 0.53
CDKL5O76039 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.39■□□□□ 0.53
CDKL5O76039 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CDKL5O76039 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.39■□□□□ 0.53
CDKL5O76039 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC18.39■□□□□ 0.53
CDKL5O76039 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CDKL5O76039 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CDKL5O76039 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms