Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC17.19■□□□□ 0.34
RNF40O75150 AL359258.3-201ENST00000622910 2331 ntBASIC17.19■□□□□ 0.34
RNF40O75150 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
RNF40O75150 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.19■□□□□ 0.34
RNF40O75150 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.19■□□□□ 0.34
RNF40O75150 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
RNF40O75150 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 AL355338.1-201ENST00000612598 913 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF40O75150 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC17.19■□□□□ 0.34
RNF40O75150 AC005786.4-201ENST00000623369 682 ntBASIC17.19■□□□□ 0.34
RNF40O75150 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF40O75150 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 ING5-213ENST00000636051 4199 ntTSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
RNF40O75150 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.19■□□□□ 0.34
RNF40O75150 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
RNF40O75150 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 AC236430.1-201ENST00000402231 743 ntBASIC17.18■□□□□ 0.34
RNF40O75150 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 AC244107.1-201ENST00000442033 332 ntBASIC17.18■□□□□ 0.34
RNF40O75150 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.18■□□□□ 0.34
RNF40O75150 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 LINC01225-203ENST00000563550 1244 ntBASIC17.18■□□□□ 0.34
RNF40O75150 AC026150.2-201ENST00000564693 1156 ntBASIC17.18■□□□□ 0.34
RNF40O75150 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.18■□□□□ 0.34
RNF40O75150 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.18■□□□□ 0.34
RNF40O75150 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC17.18■□□□□ 0.34
RNF40O75150 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
RNF40O75150 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.17■□□□□ 0.34
RNF40O75150 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RNF40O75150 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.17■□□□□ 0.34
RNF40O75150 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC17.17■□□□□ 0.34
RNF40O75150 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC17.17■□□□□ 0.34
RNF40O75150 FO538757.1-201ENST00000623083 1397 ntBASIC17.17■□□□□ 0.34
RNF40O75150 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC17.17■□□□□ 0.34
RNF40O75150 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC17.17■□□□□ 0.34
RNF40O75150 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.17■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms