Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
HDAC3O15379 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.06
HDAC3O15379 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
HDAC3O15379 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.46■□□□□ 0.06
HDAC3O15379 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
HDAC3O15379 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
HDAC3O15379 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 NARF-206ENST00000457415 1668 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 EMBP1-201ENST00000458200 901 ntBASIC15.45■□□□□ 0.06
HDAC3O15379 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.45■□□□□ 0.06
HDAC3O15379 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.45■□□□□ 0.06
HDAC3O15379 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 AC073389.1-201ENST00000595595 795 ntBASIC15.45■□□□□ 0.06
HDAC3O15379 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.45■□□□□ 0.06
HDAC3O15379 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.45■□□□□ 0.06
HDAC3O15379 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HDAC3O15379 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.45■□□□□ 0.06
HDAC3O15379 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.44■□□□□ 0.06
HDAC3O15379 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
HDAC3O15379 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
HDAC3O15379 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC15.44■□□□□ 0.06
HDAC3O15379 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
HDAC3O15379 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC15.44■□□□□ 0.06
HDAC3O15379 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.44■□□□□ 0.06
HDAC3O15379 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.44■□□□□ 0.06
HDAC3O15379 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.44■□□□□ 0.06
HDAC3O15379 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.44■□□□□ 0.06
HDAC3O15379 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 AC007686.3-201ENST00000619017 3487 ntBASIC15.44■□□□□ 0.06
HDAC3O15379 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
HDAC3O15379 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.44■□□□□ 0.06
HDAC3O15379 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HDAC3O15379 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
HDAC3O15379 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.43■□□□□ 0.06
HDAC3O15379 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC15.43■□□□□ 0.06
HDAC3O15379 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 FADS2-201ENST00000257261 2964 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
HDAC3O15379 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HDAC3O15379 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms