Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 TSEN15P1-201ENST00000423257 515 ntBASIC16.95■□□□□ 0.3
SIX2Q9NPC8 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 SLBP-205ENST00000488267 987 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 VPS29-207ENST00000549970 818 ntTSL 3 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 AL512361.1-201ENST00000554200 418 ntBASIC16.95■□□□□ 0.3
SIX2Q9NPC8 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 AL033527.5-202ENST00000641632 1098 ntBASIC16.95■□□□□ 0.3
SIX2Q9NPC8 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 Z97205.2-201ENST00000564697 1639 ntBASIC16.95■□□□□ 0.3
SIX2Q9NPC8 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.95■□□□□ 0.3
SIX2Q9NPC8 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SIX2Q9NPC8 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 AC148477.4-201ENST00000613430 1793 ntBASIC16.94■□□□□ 0.3
SIX2Q9NPC8 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.94■□□□□ 0.3
SIX2Q9NPC8 AC084364.1-201ENST00000551967 1556 ntBASIC16.94■□□□□ 0.3
SIX2Q9NPC8 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 TEX28P1-201ENST00000613479 1221 ntBASIC16.93■□□□□ 0.3
SIX2Q9NPC8 AL138828.2-201ENST00000615812 383 ntBASIC16.93■□□□□ 0.3
SIX2Q9NPC8 TEX28P2-201ENST00000617764 1221 ntBASIC16.93■□□□□ 0.3
SIX2Q9NPC8 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 ZEB1-AS1-208ENST00000607166 2503 ntBASIC16.93■□□□□ 0.3
SIX2Q9NPC8 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.93■□□□□ 0.3
SIX2Q9NPC8 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms