Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 AC254562.1-201ENST00000417586 456 ntBASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 RAB34-224ENST00000636513 888 ntTSL 5 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 AL035456.1-201ENST00000456064 1369 ntBASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LRRC40Q9H9A6 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 AC023157.3-201ENST00000619086 2088 ntBASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 AP006288.1-201ENST00000446065 395 ntBASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
LRRC40Q9H9A6 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.1■□□□□ 0.17
LRRC40Q9H9A6 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms