Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AL691432.1-201ENST00000596308 1422 ntBASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AC142381.1-201ENST00000426099 345 ntBASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AC243562.2-201ENST00000561247 970 ntBASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AC024267.1-201ENST00000582320 895 ntBASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AC008267.7-201ENST00000624570 1194 ntBASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AL136982.4-201ENST00000437689 1740 ntBASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 AC006486.2-201ENST00000624246 2199 ntBASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CLHC1Q8NHS4 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 ADH5P3-201ENST00000433842 1137 ntBASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 KRT8P48-201ENST00000515599 1220 ntBASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AC243562.1-201ENST00000560672 389 ntBASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
CLHC1Q8NHS4 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
CLHC1Q8NHS4 REXO1L1P-202ENST00000608646 1974 ntBASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms