Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS3Q8IXF0 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS3Q8IXF0 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS3Q8IXF0 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS3Q8IXF0 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS3Q8IXF0 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
NPAS3Q8IXF0 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
NPAS3Q8IXF0 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 AC099548.2-209ENST00000480264 625 ntBASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 AC022137.2-201ENST00000503482 481 ntBASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 AC244093.1-201ENST00000610837 814 ntBASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 RHOXF1P1-202ENST00000635473 501 ntBASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NPAS3Q8IXF0 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 DRD5P1-201ENST00000456605 1438 ntBASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 AC084346.2-201ENST00000607097 949 ntBASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NPAS3Q8IXF0 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.29■□□□□ 0.2
NPAS3Q8IXF0 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms